Ayub Agricultural Research Institute, Faisalabad
Different biotic and abiotic stresses are hampering wheat yield across different geographic regions. Among biotic stresses, wheat rusts are principal cause of yield reduction. Whereas among abiotic stresses, drought is the principle cause of reduction in growth and lowering yield potential. So developing rust resistance and drought tolerance in wheat germplasm is needed, which requires assessment of genetic potential of current cultivars against these stresses to identify variation among existing germplasm. Screening of genotypes under naturally prevailing races of rust species is the better and inexpensive approach. In the present study 65 genotypes including five checks (AARI-11, Chakwal- 50, Aas- 11, Morocco and Galaxy-13) were evaluated for adult plant response to wheat rusts and water deficit conditions. Experimental material was planted in four blocks each having new entries along with repetition of five checks in augmented design. Data was recorded on morphological traits including plant height, peduncle length, spike length, productive tillers per meter, flag leaf area, number of spikelet per spike, grains per spike, single head weight, 1000 grain weight, days to maturity and grain yield per acre. Significant variation was observed among genotypes for all the studied traits. On the basis of performance G39 and G36 were better than commercial drought check Chakwal-50 in almost all the traits. However rust screening under natural rust infestation revealed that although Morocco showed susceptible (S) response yet only six genotypes were susceptible to yellow rust whereas all others were resistant. In case of leaf rust 29 were completely resistance, 25 were moderately resistant, seven were moderately susceptible and only four were completely susceptible to currently active races of leaf rust. However, in the case of stem rust, 61 genotypes showed complete resistance to stem rust, two showed moderately resistance and two were moderately susceptible. Information obtained from this study would be favorable for breeding rust resistant and drought tolerant cultivars.
National Agronomic Institute of Tunisia
Sana Kamel, Elhem, Elfahem, Wissal Feriani, Hanen Sbei
In order to identify sources of resistance to tan spot caused by Pyrenophora tritici-repentis, 359 local wheat accessions were evaluated for reaction to the Oued-Mliz isolate in controlled conditions and in the field. Two and three assessments were carried out at the seedling and adult stages, respectively. There was a highly significant accession effect and 4.2% of accessions were highly resistant in both controlled conditions and the field. Assessments at the seedling stage were positively correlated with each other, and assessments in the adult stage were also positively correlated. However, assessments at the seedling stage were negatively correlated with those at the adult stage. One hundred and fifty five accessions with known origins (from 15 localities belonging to four districts) were projected on a graph defined by the two axes: reactions at the seedling stage and reactions at the adult stage. After placing the average reactions at the seedling and adult stages on the graph, four groups of accessions were obtained: accessions that were resistant to both stages, accessions that were resistant at the adult stage only, accessions that were resistant at the seedling stage only, and accessions that were susceptible at both stages. All four groups were found in each district. However, considering localities, reactions of accessions were highly variable. For example, accessions originating from Menzel Hbib were genetically variable and were represented in each of the four groups, whereas accessions from Sidi El Hani were all resistant at both stages. Further work is needed to study the genetic variability within and between localities and to better understand the resistant accessions.
Ayele Badebo, Abebe Atilaw, Habtemariam Zegeye, Zerihun Tadesse, Wasihun Legesse, Terefe Fitta, Dawit Asnake
In Ethiopia, quality seed of improved varieties is the least expensive and most critical input for the sustainable production of wheat, a strategic food security crop grown by some 4.7 million households on 1.7 million hectares. Because wheat is self-pollinated, farmers can save and replant seed from their harvests for several years, without the variety losing its genetic identity. At the same time, recommended seed rates for wheat (150 to 200 kilograms per hectare) are significantly higher than those for tef (15 kg/ha) or maize (25 kg/ha), so some 255,000 tons of seed is required to sow Ethiopia's entire wheat area each year. Most of this still comes from informal seed systems; only four seed enterprises (ESE, ASE, OSE and SNNPSE) currently produce certified seed of various crops and they lack the capacity to supply enough high quality seed for the nation's approximately 20 million households. In collaboration with the Ethiopian Institute of Agricultural Research (EIAR) and through the USAID-funded project "Seed multiplication and delivery of high-yielding rust resistant bread and durum wheat varieties to Ethiopian farmers," the International Maize and Wheat Improvement Center (CIMMYT) is working to increase wheat farmers access to affordable, certified seed of improved varieties that are high-yielding and also feature durable resistance to the rust diseases. Approaches pursued include the fast-track evaluation and release of improved varieties, the pre-release or accelerated seed multiplication of released wheat varieties through formal and informal seed systems, and demonstrations and scaling up of improved wheat varieties. This paper describes best practices to address seed shortages faced by wheat farmers in 53 woredas.
The University of Agriculture, Peshawar, Pakistan
Muhammad Khan, Muhammad Imtiaz, Zahoor Swati, Annemarie Justesen, Sajid Ali
Yellow rust caused by Puccinia striiformis is an important disease in Pakistan. The population structure of P. striiformis in the North Eastern Himalayan region of Pakistan have been shown to be genotypically diverse with potential role of sexual recombination (Ali et al., 2014b), while lesser diversity in the Southern districts of Khyber Pakhtunkhwa (KP)(Khan et al., 2015). This study was designed for the first time to assess disease status and analyze population structure of P. striiformis across three distant parts of Northwestern Pakistan i.e., Bajaur in North Western Agency and Swat and Buner in Malakand Agency, and was compared with other Pakistani populations. Depending on the intensity of infections caused by the pathogen in the tested varieties and breeding lines, the severity of the disease ranged from 5% to 100% during 2015. Yellow rust severity was the maximum on Morocco (100%), Gomal (100%) and KPWYT-18 (80%) and moderate on Ghanimat-e-IBGE (10%) and PS-2008, PS-2013, Tatara and Millat with 20% severity. A total of 81 single lesion samples collected on infected varieties were genotyped with 18 microsatellite markers. From these, 63 distinct multilocus genotypes (MLGs) were detected; 15 single lesion samples collected from Buner produced 15 distinct MLGs signifying very high diversity. A high genotypic diversity with clear signature of recombination was detected across all the three locations. Buner (100%) had the maximum diversity followed by Swat (97%) and Bajaur (91%). The observed diversity was almost equal to other Northeastern Himalayan populations of Pakistan, while it was high when compared to some southern populations of KP (genotypic diversity of 0.895) and other worldwide clonal populations (Ali et al., 2014a). The high diversity and recombinant population structure suggested potential role of sexual reproduction in these areas, which needs to be further explored to establish the origin of diverse virulence pattern in Pakistan.
1,3 Colegio de Postgraduados-Fitosanidad, Campus Montecillo, Texcoco, 56230, Estado de M?xico, M?xico
Julio Huerta-Espino, Ravi P. Singh, Caixia Lan, Sridhar Bhavani, Reyna I. Rojas-Martínez, Ignacio Benitez-Riquelme, Cristian Nava-Díaz, Mandeep Singh Randhawa
Leaf rust and stripe rust caused by the fungi Puccinia triticina and P. striiformis f. sp. tritici, respectively, are important diseases of wheat and represent a significant threat in most wheat producing regions worldwide. Growing resistant varieties and the identification and characterization of new sources of resistance are necessary to combat the threat from the evolving pathogen population. Bread wheat (Triticum aestivum L.) line 'Kijil' developed at CIMMYT showed adult plant resistance (APR) to leaf rust (LR) and stripe rust (YR). The genetic basis of the resistance was investigated using 198 recombinant inbred lines (RILs) derived from the cross of susceptible Apav#1 and resistant Kijil. Field phenotyping of parents and RILs were conducted at El Batón, Toluca and Ciudad Obregon, Mexico during 2016 and 2017. Pearson correlation coeffcients (P< 0.0001) were high for disease severities between two years of evaluations: LR (r= 0.90) and YR (r= 0.83). Correlations (r= 0.30-0.76) were also significant between LR and YR in all environments. Genetic analyses indicated that 3 to 5 genes of additive effects governed resistance to both rusts. RILs carrying the pleiotropic APR gene Lr46/Yr29/Sr58 showed 23 and 41% of disease severity for LR and YR respectively, whereas lines lacking it had 55 and 78% severities. RILs positive for Sr2/Yr30 showed 66% YR severity, whereas those negative displayed 78%. In addition, lines carrying the race-specific gene Yr17/Sr38 showed 28% YR severity in contrast to non-carriers that displayed 78% severity. We conclude that Kijil possesses a complex nature of resistance.
University of Seville
Solis,Ignacio, , , , , , , , , , , , , , , , , , , , , , , , , , , ,
Leaf rust is an important worldwide disease on wheat caused by the fungus Puccinia triticina. Great infections on durum wheat occurred in Southern Spain in the 2000s but diminished in recent years due to deployment of resistant varieties and application of fungicides by farmers. A leaf rust survey was carried out from the 2009-15 period to monitor the virulence spectrum of the prevailing pathotypes. A total of 84 leaf rust isolates were collected on durum wheat fields. From those, single culture were obtained and used to inoculate a set of 27 differential isolines of the susceptible variety Thatcher. In addition 8 durum varieties with known Lr genes were also included.
The main highlight is that the resistance conferred by the popular Lr14a gene was broke up in 2013, but since then virulence to this gene is not widespread. In total, 23% of the isolates were virulent to the lines containing Lr14a. Lr1, Lr3, Lr3bg, Lr16, Lr24, Lr26, and Lr28 are very effective. Lines carrying Lr2c, Lr10, Lr14b, Lr20, Lr23, and LrB displayed susceptibility to most isolates. The durum varieties Jupare (Lr27+Lr31), Guayacan (Lr61), Storlom (Lr3+) and Camayo (LrCam) are also resistant against all isolates tested. Diversification of Lr genes is needed in the coming varieties to delay the appearance of new virulent races.
State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest A&F University
Yuan Tian, Yan Meng, Hengbo Ma, Lili Huang, Zhensheng Kang
Stripe rust, caused by Puccinia striiformis Westend f.sp. tritici, is currently one of the most prevalent and damaging disease on wheat. Up to now, some genes in wheat which are resistant to wheat stripe rust have been cloned, but little is known about the corresponding avirulence gene according to the gene-for-gene hypothesis. A population containing 118 progeny isolates population acquired by selfing an isolate, PL17-7, with virulence to Yr26 was derived. Seventy-two progeny isolates were different in genotype depending on 92 simple sequence repeat (SSR) markers. The progeny population segregated for avirulence to Yr6 at one locus (3 avirulent :1 virulent ratio). The parental isolate and 72 of 118 progeny isolates were resequenced to find candidate avirulence genes corresponding to Yr6. Overall, 7.6 million reads per sample were obtained and mapped to the draft genome of a Chinese Pst isolate CY32. The median depth of coverage was 63.6 fold. For each isolate, between 97.6% and 98.1% of the sequence reads were mapped to the race CY32 genome, which covered between 87.3% and 95.4% of the reference genome bases. An average of 97357 single nucleotide polymorphisms (SNP) per isolate was found, which covered 8.1% of the reference genome. Different SNPs and Indels were found when isolates virulent and avirulent to wheat cultivar containing Yr6 were grouped into two groups. Though screening discrepant SNP and indel in these two groups, candidate avirulence genes corresponding to Yr6 may be found.
Jianping Zhang, Peng Zhang, Robert Park, Narayana Upadhyaya, Robert McIntosh, Sambasivam Periyannan, Brande Wulff, Burkhard Steuernagel, Evans Lagudah
Evolution of rust pathogens continues to pose challenges to global wheat production. Major resistance (R) genes, which encode proteins of the NBS-LRR (Nucleotide-binding site, leucine-rich repeat) family, have been a valuable resource for breeders to minimise yield losses from infection. Many wheat varieties harbor numerous R genes that could be identified and cloned in order to engineer more sustainable disease control. The advent of targeted gene enrichment and next-generation sequencing (NGS) has allowed rapid cloning of specific R genes, thus enhancing efforts to pyramid these genes and investigate their underlying resistance mechanisms. Several R genes present different phenotypes in certain genetic backgrounds, and cloning them would be an important step towards uncovering their interactions. Hybrid necrosis is one such phenotype observed in crosses of wheat genotypes involving the R gene Lr13 and complementary genes, Ne1 and Ne2, occurring in different allelic forms. It was recently concluded that Lr13 and an allele of Ne2 are actually the same gene based on genetic and mutational studies. The capability of Lr13 to confer both leaf rust resistance and hybrid necrosis cannot be answered without first cloning it. The lack of tightly linked markers coupled with the proximal 2BS chromosomal location of Lr13 does not make it easily amenable to map-based cloning. The NGS-based pipeline MutRenSeq (mutagenesis and R-gene enrichment sequencing) was used on EMS (Ethyl methanesulfonate) induced, susceptible Lr13 mutants along with support from comparative genomics to ascertain candidate gene sequences for Lr13, which are at advanced stages of screening and confirmation. Definite proof that a single gene is involved will only come with transformation studies when the cloned Lr13 candidate transformed into a susceptible line confers both a resistance phenotype in the transgenic line and a necrotic phenotype in the offspring of crosses between the transgenic line and a line possessing Ne1.
Omsk State Agricultural University, Omsk, Russia
Elena Salina, Yuriy Zelenskiy, Alma Kokhmetova, Mehran Patpour, Mogens Hovmøller, Pablo Olivera, Les Szabo, Yue Jin, Marcel Meyer, Chris Gilligan, Matthew Hort, Dave Hodson, Alexey Morgunov
Short season, high latitude spring wheat is grown on 7 million ha in Western Siberia and 10 million ha in Northern Kazakhstan. Despite relatively low wheat yields (1.5 t/ha), the region is extremely important for regional and global food security. Leaf rust dominates, occurring three years out of five, especially in favorable years with higher rainfall. Since 2010, stem rust has been observed at an increasing number of sites. The first large-scale stem rust outbreak occurred in 2015 and affected about 0.5-1 million ha in Omsk, Western Siberia. In 2016, 2 million ha were affected in the Omsk and Altay regions, while 1 million ha in the Kostanay and Northern Kazakhstan regions were affected in 2017. Estimated yield losses reached 25-35% each year. Factors associated with the outbreaks included: higher rainfall in late June and July; cultivation of susceptible varieties; and an increased area planted to winter wheat, which serves as a source of inoculum. Sampling and race analysis revealed a diverse pathogen population, indicative of a sexual recombination. A total of 51 races were identified from 31 samples taken in 2015 and 2016. All races were avirulent on Sr31. The majority of varieties released and cultivated in the region are susceptible to stem rust and require replacing. A recent study of 150 local resistant varieties and breeding lines indicated that the genetic basis of resistance was limited to Sr25, Sr31, Sr36, Sr6Ai, Sr6Ai#2, and additional unknown major genes. Adult-plant resistance to stem rust was observed in less than 20% of the germplasm. The potential impact of these large stem rust outbreaks on other wheat growing regions is being investigated by analyzing spore wind dispersal patterns. Further research is required to understand and mitigate the sudden appearance of stem rust as a disease of economic importance.
Study at Omsk State Agrarian University was supported by the Russian Science Foundation (project No. 16-16-10005).
Ravi P Singh, Julio Huerta-Espino
Aphids are major pests of wheat, able to cause up to 40% yield reduction solely due to direct feeding and up to 60% when feeding is combined with the transmission of viral diseases. Wheat resistance to aphids has proven to be effective in protecting yields and also in reducing the transmission rate of viral diseases. Moreover, aphid resistance is fundamental to reduce the negative impacts that the indiscriminate use of insecticides have on the environment and human health. In this study we report the results derived from the evaluation of 326 synthetic hexaploid wheat (SHW) derived lines against the greenbug (Schizaphis graminum [Rondai]). Primary SHWs were crossed with CIMMYT elite lines and further selected in the breeding pipeline. Therefore, such lines have acceptable agronomic characteristics for its further use in breeding programs. The 326 SHW derived lines were evaluated at seedling stage, in five augmented incomplete blocks, arranged in split-plots, with two treatments (infested vs. non-infested) and with resistant and susceptible checks replicated 16 times. The measured variables were chlorophyll content with a SPAD meter and a visual damage score in a scale 0-100 was also taken. Measurements were recorded when the susceptible check was dead due to aphid feeding. The evaluations were repeated two times for confirmation. Our results indicate the presence of genetic variation for S. graminum resistance. We identified about 4 % of the lines to carry high levels of resistance against this aphid. These lines are currently used in CIMMYT's bread wheat breeding program to incorporate the resistance in elite germplasm.